PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G331700.1
Common NameB456_007G331700, LOC105761343
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family DBB
Protein Properties Length: 284aa    MW: 30681.2 Da    PI: 4.5745
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G331700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.96.4e-06447542
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                         C+ +e  e++  C +++  lC +C ++ H        H++vpl
  Gorai.007G331700.1  4 QCNVCEVAEAKVLCCSDEAALCLECDEKVHAAnklaskHQRVPL 47
                        6*****999*********************66899999999986 PP

2zf-B_box24.65.3e-085494337
            zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                        +++C+ ++e    +fC +++ llC++C  ++H        H
  Gorai.007G331700.1 54 MPTCDICQETSGFFFCLQDRALLCRKCDIAIHTAnpyvssH 94
                        799******99*********************544555555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.48147IPR000315B-box-type zinc finger
CDDcd000212.98E-7347No hitNo description
SMARTSM003362.5E-9447IPR000315B-box-type zinc finger
PROSITE profilePS501198.8735299IPR000315B-box-type zinc finger
SMARTSM003362.8E-135299IPR000315B-box-type zinc finger
PfamPF006431.4E-55494IPR000315B-box-type zinc finger
CDDcd000215.71E-75791No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MRIQCNVCEV AEAKVLCCSD EAALCLECDE KVHAANKLAS KHQRVPLSSS SSHMPTCDIC  60
QETSGFFFCL QDRALLCRKC DIAIHTANPY VSSHQRFVLT GVKVGLDTTT DPVGSSSYIK  120
SPSSEKTSET KSDSMSKRDA PMSFISECNE VLPSIIGVEN SVPTKVSYGG GSTAGGIQSW  180
HMDDLFGLTG LNQSFGYMDN ELSKADSGKC GDSDGSPFLR PAEEEVFDDE YMGQVPESHW  240
AVPQVPSPPT ASGLYWPKDS HNQSDSAVFV PDISWSSVEN PFH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012434581.10.0PREDICTED: B-box zinc finger protein 22-like
SwissprotQ9SYM22e-88BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A0D2R3E00.0A0A0D2R3E0_G
STRINGPGSC0003DMT4000181961e-125(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56062849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.15e-86light-regulated zinc finger protein 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]